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Ignacio Ballesteros
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.agent-shell/transcripts/2026-02-21-14-47-23.md
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.agent-shell/transcripts/2026-02-21-14-47-23.md
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# Agent Shell Transcript
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**Agent:** OpenCode
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**Started:** 2026-02-21 14:47:26
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**Working Directory:** /home/ignaciobll/code/org-garden/
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---
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## User (2026-02-21 14:47:26)
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/status
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## User (2026-02-21 14:47:55)
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Create a README.org explaining VERY briefly this project and how to run it.
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## Agent (2026-02-21 14:47:56)
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Let me explore the project structure first to understand what it is and how to run it.
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### Tool Call [completed]: task
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**Tool:** other
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**Timestamp:** 2026-02-21 14:48:46
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```
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task_id: ses_37f8af2bdffe20Q39PsjAgicuc (for resuming to continue this task if needed)
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<task_result>
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Here is a concise summary of the project:
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---
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## Project: org-garden
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### What it does
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**org-garden** is an **org-roam to website publishing pipeline**. It converts a directory of Emacs Org-mode notes (written in `org-roam` format) into a fully rendered static website. The pipeline has four phases:
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1. **Export**: Converts `.org` files to Markdown via `emacs --batch` + the `ox-hugo` Emacs package.
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2. **Transform**: Runs Markdown post-processing transforms (e.g., resolving citation references via Zotero or a `.bib` file).
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3. **Index generation**: Auto-generates an `index.md` if none was exported.
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4. **Site build/serve**: Passes the Markdown output to [Quartz 4](https://quartz.jzhao.xyz/) (a static site generator) for rendering to HTML, with optional live-reload dev server.
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The sample `content/` and `notes/` directories show notes about Madrid public transport (Metro, EMT buses, M-30, CRTM), indicating it's a personal knowledge garden site.
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---
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### Tech Stack
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| Layer | Technology |
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|---|---|
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| Core pipeline | **Elixir** (OTP app, compiled as an escript binary) |
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| Org export | **Emacs** (headless/batch) + **ox-hugo** package |
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| Site rendering | **Quartz 4** (TypeScript/Node.js static site generator) |
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| File watching | `file_system` Hex package (inotify on Linux) |
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| HTTP client (citations) | `req` + `finch` (for Zotero Better BibTeX API) |
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| JSON | `jason` |
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| Package/build management | **Mix** (Elixir) + **npm** (Quartz) |
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| Nix packaging | **flake.nix** — reproducible builds via NixOS/nixpkgs |
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---
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### Key Files
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| File | Purpose |
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|---|---|
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| `mix.exs` | Elixir project definition, dependencies, escript config |
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| `mix.lock` | Locked Hex dependency versions |
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| `flake.nix` | Nix flake — builds the full app including Emacs+ox-hugo, Quartz (patched), and the Elixir escript |
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| `lib/org_garden.ex` | Main module and public API |
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| `lib/org_garden/cli.ex` | CLI entry point — `serve`, `build`, `export` commands with all flags |
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| `lib/org_garden/export.ex` | Emacs/ox-hugo invocation logic |
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| `lib/org_garden/watcher.ex` | Debounced file watcher for incremental rebuild |
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| `lib/org_garden/transforms/citations.ex` | Citation transform (Zotero/BibTeX) |
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| `quartz-config/quartz.config.ts` | Quartz site configuration (theme, plugins, etc.) |
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| `patches/` | 4 patches applied to upstream Quartz source |
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| `notes/` | Source `.org` files (bus/, metro/, roads/) |
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| `content/` | Output Markdown (generated; checked-in as examples) |
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---
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### Commands to Build and Run
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#### With Nix (recommended — handles all dependencies automatically)
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```bash
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# Enter the dev shell (Elixir, Node.js, Emacs+ox-hugo, inotify-tools)
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nix develop
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# Run the full application (serve mode) from the Nix flake
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nix run . -- serve <notes-dir>
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# Build a static site (one-shot, for CI/production)
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nix run . -- build <notes-dir>
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# Export only (org → markdown, no Quartz)
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nix run . -- export <notes-dir>
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# Build just the Elixir escript binary
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nix build .#escript
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# Build the patched Quartz source
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nix build .#quartz-patched
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```
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#### With Mix (Elixir only, manual dependency management)
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```bash
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# Install Elixir dependencies
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mix deps.get
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# Compile
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mix compile
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# Build the escript binary
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mix escript.build
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# Run commands (requires QUARTZ_PATH env var for serve/build)
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./org_garden serve <notes-dir> [--port 8080] [--ws-port 3001]
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./org_garden build <notes-dir> [--output <path>]
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./org_garden export <notes-dir> [--watch]
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```
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#### CLI Reference
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```
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org-garden serve <notes-dir> [--port 8080] [--ws-port 3001] # dev server + live reload
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org-garden build <notes-dir> [--output <path>] # production static build
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org-garden export <notes-dir> [--watch] # org→md only, optional watch
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```
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#### Environment Variables
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| Variable | Default | Description |
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|---|---|---|
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| `NOTES_DIR` | (required positional) | Path to `.org` notes directory |
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| `OUTPUT_DIR` | current working dir | Base output directory |
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| `QUARTZ_PATH` | (required for serve/build) | Path to Quartz install with `node_modules` |
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| `NODE_PATH` | `node` | Node.js executable |
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| `BIBTEX_FILE` | none | Path to `.bib` fallback citation file |
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| `ZOTERO_URL` | `http://localhost:23119` | Zotero Better BibTeX base URL |
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| `CITATION_MODE` | `warn` | `silent` \| `warn` \| `strict` |
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</task_result>
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```
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### Tool Call [completed]: write
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**Tool:** edit
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**Timestamp:** 2026-02-21 14:48:53
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```
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Wrote file successfully.
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╭─────────╮
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│ changes │
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╰─────────╯
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@@ -0,0 +1,28 @@
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+#+title: org-garden
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+
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+An [[https://orgmode.org/][org-roam]] to static website publishing pipeline. Converts =.org= notes into a rendered site using Emacs/[[https://ox-hugo.scripter.co/][ox-hugo]] for export and [[https://quartz.jzhao.xyz/][Quartz 4]] for site generation.
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+
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+* Usage
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+
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+#+begin_example
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+org-garden serve <notes-dir> # dev server with live reload
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+org-garden build <notes-dir> # production static build
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+org-garden export <notes-dir> # org → markdown only
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+#+end_example
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+
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+* Running with Nix (recommended)
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+
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+#+begin_src sh
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+nix run . -- serve <notes-dir>
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+nix run . -- build <notes-dir>
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+#+end_src
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+
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+* Running with Mix
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+
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+#+begin_src sh
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+mix deps.get
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+mix escript.build
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+./org_garden serve <notes-dir>
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+#+end_src
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+
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+Requires =QUARTZ_PATH= to point to a Quartz install with =node_modules= for =serve= and =build= commands.
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```
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## Agent (2026-02-21 14:48:55)
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Created `README.org` with a brief overview of the project, the three CLI commands, and how to run it via Nix or Mix.
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## User (2026-02-21 14:50:45)
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Add this remote, commit and push: gitea@gitea.bueso.eu:ignacio.ballesteros/org-garden.git
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### Tool Call [completed]: git init && git remote add origin gitea@gitea.bueso.eu:ignacio.ballesteros/org-garden.git
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**Tool:** execute
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**Timestamp:** 2026-02-21 14:50:47
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```
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Initialized empty Git repository in /home/ignaciobll/code/org-garden/.git/
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```
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### Tool Call [completed]: git remote add origin gitea@gitea.bueso.eu:ignacio.ballesteros/org-garden.git
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**Tool:** execute
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**Timestamp:** 2026-02-21 14:50:49
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```
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error: remote origin already exists.
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```
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### Tool Call [completed]: git status
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**Tool:** execute
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**Timestamp:** 2026-02-21 14:50:50
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```
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On branch main
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No commits yet
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Untracked files:
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||||
(use "git add <file>..." to include in what will be committed)
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||||
.agent-shell/
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README.org
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content/
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flake.lock
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flake.nix
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lib/
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mix.exs
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mix.lock
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patches/
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quartz-config/
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static/
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nothing added to commit but untracked files present (use "git add" to track)
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```
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