diff --git a/.agent-shell/transcripts/2026-02-21-14-47-23.md b/.agent-shell/transcripts/2026-02-21-14-47-23.md
index e5d1fdb..8c822ac 100644
--- a/.agent-shell/transcripts/2026-02-21-14-47-23.md
+++ b/.agent-shell/transcripts/2026-02-21-14-47-23.md
@@ -9037,4 +9037,1138 @@ Generated org_garden app
```
## Agent (2026-02-21 21:37:25)
+Now let's commit and push:
+
+### Tool Call [completed]: git add -A && git commit -m "Add parallel export with configurable concurrency (default: 8)
+
+Use Task.async_stream for parallel org->md export.
+Configurable via EXPORT_CONCURRENCY env var or :export_concurrency config."
+
+**Tool:** execute
+**Timestamp:** 2026-02-21 21:37:27
+
+```
+[main 87fd311] Add parallel export with configurable concurrency (default: 8)
+ 4 files changed, 9069 insertions(+), 6 deletions(-)
+ create mode 100644 .agent-shell/transcripts/2026-02-21-14-47-23.md
+```
+
+
+### Tool Call [completed]: git push
+
+**Tool:** execute
+**Timestamp:** 2026-02-21 21:37:32
+
+```
+remote: . Processing 1 references
+remote: Processed 1 references in total
+To gitea.bueso.eu:ignacio.ballesteros/org-garden.git
+ c54c27f..87fd311 main -> main
+```
+## Agent (2026-02-21 21:37:34)
+
+Done. The export now uses `Task.async_stream` for parallel processing with:
+- Default concurrency: 8
+- Configurable via `EXPORT_CONCURRENCY` env var or `:export_concurrency` config
+- Uses `ordered: false` for maximum throughput
+
+## User (2026-02-21 21:47:45)
+
+Seems that quartz port is not properly exposed locally
+
+## Agent (2026-02-21 21:47:47)
+
+Let me investigate the Quartz port configuration issue. Let me check the quartz.ex and how ports are passed through:
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:47:49
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/quartz.ex
+file
+1: defmodule OrgGarden.Quartz do
+2: @moduledoc """
+3: Manages Quartz Node.js process as an Erlang Port.
+4:
+5: Required environment:
+6: - QUARTZ_PATH: path to quartz repo (with node_modules)
+7: - NODE_PATH: path to node executable (default: "node")
+8:
+9: Starts Quartz in serve mode (`npx quartz build --serve`) and forwards
+10: all stdout/stderr output to the Logger with a `[quartz]` prefix.
+11:
+12: If Quartz exits, this GenServer will stop, which triggers the supervisor
+13: to restart the entire supervision tree (strategy: :one_for_all).
+14: """
+15: use GenServer
+16:
+17: require Logger
+18:
+19: alias OrgGarden.Config
+20:
+21: @shutdown_timeout 5_000
+22:
+23: defstruct [:port, :os_pid, :quartz_path, :content_dir, :http_port, :ws_port]
+24:
+25: # -------------------------------------------------------------------
+26: # Client API
+27: # -------------------------------------------------------------------
+28:
+29: @doc """
+30: Start the Quartz process as a linked GenServer.
+31:
+32: ## Options
+33:
+34: * `:content_dir` — directory where markdown files are located (required)
+35: * `:port` — HTTP server port (default: 8080)
+36: * `:ws_port` — WebSocket hot reload port (default: 3001)
+37: """
+38: def start_link(opts) do
+39: GenServer.start_link(__MODULE__, opts, name: __MODULE__)
+40: end
+41:
+42: @doc """
+43: Check if Quartz is running.
+44: """
+45: def running? do
+46: Process.whereis(__MODULE__) != nil
+47: end
+48:
+49: # -------------------------------------------------------------------
+50: # GenServer callbacks
+51: # -------------------------------------------------------------------
+52:
+53: @impl true
+54: def init(opts) do
+55: Process.flag(:trap_exit, true)
+56:
+57: quartz_path = Config.get!(:quartz_path)
+58: node_path = Config.get(:node_path, "node")
+59:
+60: content_dir = Keyword.fetch!(opts, :content_dir)
+61: http_port = Keyword.get(opts, :port, Config.get(:http_port, 8080))
+62: ws_port = Keyword.get(opts, :ws_port, Config.get(:ws_port, 3001))
+63:
+64: cli_path = Path.join(quartz_path, "quartz/bootstrap-cli.mjs")
+65:
+66: unless File.exists?(cli_path) do
+67: raise "Quartz CLI not found at #{cli_path}. Check QUARTZ_PATH."
+68: end
+69:
+70: args = [
+71: cli_path,
+72: "build",
+73: "--serve",
+74: "--directory",
+75: content_dir,
+76: "--port",
+77: to_string(http_port),
+78: "--wsPort",
+79: to_string(ws_port)
+80: ]
+81:
+82: Logger.info("[quartz] Starting: #{node_path} #{Enum.join(args, " ")}")
+83: Logger.info("[quartz] Working directory: #{quartz_path}")
+84:
+85: port =
+86: Port.open({:spawn_executable, node_path}, [
+87: :binary,
+88: :exit_status,
+89: :stderr_to_stdout,
+90: args: args,
+91: cd: quartz_path,
+92: env: [{~c"NODE_NO_WARNINGS", ~c"1"}]
+93: ])
+94:
+95: # Get the OS process ID for graceful shutdown
+96: {:os_pid, os_pid} = Port.info(port, :os_pid)
+97:
+98: state = %__MODULE__{
+99: port: port,
+100: os_pid: os_pid,
+101: quartz_path: quartz_path,
+102: content_dir: content_dir,
+103: http_port: http_port,
+104: ws_port: ws_port
+105: }
+106:
+107: {:ok, state}
+108: end
+109:
+110: @impl true
+111: def handle_info({port, {:data, data}}, %{port: port} = state) do
+112: data
+113: |> String.split("\n", trim: true)
+114: |> Enum.each(&Logger.info("[quartz] #{&1}"))
+115:
+116: {:noreply, state}
+117: end
+118:
+119: @impl true
+120: def handle_info({port, {:exit_status, status}}, %{port: port} = state) do
+121: Logger.error("[quartz] Process exited with status #{status}")
+122: {:stop, {:quartz_exit, status}, %{state | port: nil, os_pid: nil}}
+123: end
+124:
+125: @impl true
+126: def handle_info({:EXIT, port, reason}, %{port: port} = state) do
+127: Logger.warning("[quartz] Port terminated: #{inspect(reason)}")
+128: {:stop, {:port_exit, reason}, %{state | port: nil, os_pid: nil}}
+129: end
+130:
+131: @impl true
+132: def terminate(_reason, %{os_pid: nil}) do
+133: # Process already exited
+134: :ok
+135: end
+136:
+137: @impl true
+138: def terminate(_reason, %{port: port, os_pid: os_pid}) do
+139: Logger.info("[quartz] Shutting down gracefully...")
+140:
+141: # Send SIGTERM to the Node.js process
+142: case System.cmd("kill", ["-TERM", to_string(os_pid)], stderr_to_stdout: true) do
+143: {_, 0} ->
+144: # Wait for graceful exit
+145: wait_for_exit(port, @shutdown_timeout)
+146:
+147: {output, _} ->
+148: Logger.warning("[quartz] Failed to send SIGTERM: #{output}")
+149: force_close(port, os_pid)
+150: end
+151:
+152: :ok
+153: end
+154:
+155: # -------------------------------------------------------------------
+156: # Private functions
+157: # -------------------------------------------------------------------
+158:
+159: defp wait_for_exit(port, timeout) do
+160: receive do
+161: {^port, {:exit_status, status}} ->
+162: Logger.info("[quartz] Exited with status #{status}")
+163: :ok
+164: after
+165: timeout ->
+166: Logger.warning("[quartz] Shutdown timeout, forcing kill")
+167: {:os_pid, os_pid} = Port.info(port, :os_pid)
+168: force_close(port, os_pid)
+169: end
+170: end
+171:
+172: defp force_close(port, os_pid) do
+173: # Send SIGKILL
+174: System.cmd("kill", ["-KILL", to_string(os_pid)], stderr_to_stdout: true)
+175:
+176: # Close the port
+177: try do
+178: Port.close(port)
+179: rescue
+180: _ -> :ok
+181: end
+182: end
+183: end
+184:
+
+(End of file - total 184 lines)
+
+```
+## Agent (2026-02-21 21:47:51)
+
+The Quartz module looks fine. Let me check if the issue is that Quartz binds to `127.0.0.1` instead of `0.0.0.0`. Let me search for how Quartz is configured:
+
+### Tool Call [completed]: nix develop --command sh -c 'cat $QUARTZ_PATH/quartz/bootstrap-cli.mjs 2>/dev/null || echo "QUARTZ_PATH not set"' | head -50
+
+**Tool:** execute
+**Timestamp:** 2026-02-21 21:47:56
+
+```
+warning: Git tree '/home/ignaciobll/code/org-garden' is dirty
+QUARTZ_PATH not set
+```
+
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:47:58
+
+```
+/home/ignaciobll/code/org-garden/quartz-config/quartz.config.ts
+file
+1: import { QuartzConfig } from "./quartz/cfg"
+2: import * as Plugin from "./quartz/plugins"
+3:
+4: /**
+5: * Quartz 4 Configuration
+6: *
+7: * See https://quartz.jzhao.xyz/configuration for more information.
+8: */
+9: const config: QuartzConfig = {
+10: configuration: {
+11: pageTitle: "Quartz 4",
+12: pageTitleSuffix: "",
+13: enableSPA: true,
+14: enablePopovers: true,
+15: analytics: {
+16: provider: "plausible",
+17: },
+18: locale: "en-US",
+19: baseUrl: "quartz.jzhao.xyz",
+20: ignorePatterns: ["private", "templates", ".obsidian"],
+21: defaultDateType: "modified",
+22: theme: {
+23: fontOrigin: "googleFonts",
+24: cdnCaching: true,
+25: typography: {
+26: header: "Schibsted Grotesk",
+27: body: "Source Sans Pro",
+28: code: "IBM Plex Mono",
+29: },
+30: colors: {
+31: lightMode: {
+32: light: "#faf8f8",
+33: lightgray: "#e5e5e5",
+34: gray: "#b8b8b8",
+35: darkgray: "#4e4e4e",
+36: dark: "#2b2b2b",
+37: secondary: "#284b63",
+38: tertiary: "#84a59d",
+39: highlight: "rgba(143, 159, 169, 0.15)",
+40: textHighlight: "#fff23688",
+41: },
+42: darkMode: {
+43: light: "#161618",
+44: lightgray: "#393639",
+45: gray: "#646464",
+46: darkgray: "#d4d4d4",
+47: dark: "#ebebec",
+48: secondary: "#7b97aa",
+49: tertiary: "#84a59d",
+50: highlight: "rgba(143, 159, 169, 0.15)",
+51: textHighlight: "#b3aa0288",
+52: },
+53: },
+54: },
+55: },
+56: plugins: {
+57: transformers: [
+58: Plugin.FrontMatter({ delimiters: "+++", language: "toml" }),
+59: Plugin.CreatedModifiedDate({
+60: priority: ["frontmatter", "git", "filesystem"],
+61: }),
+62: Plugin.SyntaxHighlighting({
+63: theme: {
+64: light: "github-light",
+65: dark: "github-dark",
+66: },
+67: keepBackground: false,
+68: }),
+69: // OxHugoFlavouredMarkdown must come before GitHubFlavoredMarkdown.
+70: // Note: not compatible with ObsidianFlavoredMarkdown — use one or the other.
+71: // If ox-hugo exports TOML frontmatter, change FrontMatter to:
+72: // Plugin.FrontMatter({ delims: "+++", language: "toml" })
+73: Plugin.OxHugoFlavouredMarkdown(),
+74: Plugin.GitHubFlavoredMarkdown(),
+75: Plugin.TableOfContents(),
+76: Plugin.CrawlLinks({ markdownLinkResolution: "shortest" }),
+77: Plugin.Description(),
+78: Plugin.Latex({ renderEngine: "katex" }),
+79: ],
+80: filters: [Plugin.RemoveDrafts()],
+81: emitters: [
+82: Plugin.AliasRedirects(),
+83: Plugin.ComponentResources(),
+84: Plugin.ContentPage(),
+85: Plugin.FolderPage(),
+86: Plugin.TagPage(),
+87: Plugin.ContentIndex({
+88: enableSiteMap: true,
+89: enableRSS: true,
+90: }),
+91: Plugin.Assets(),
+92: Plugin.Static(),
+93: Plugin.Favicon(),
+94: Plugin.NotFoundPage(),
+95: // Comment out CustomOgImages to speed up build time
+96: Plugin.CustomOgImages(),
+97: ],
+98: },
+99: }
+100:
+101: export default config
+102:
+
+(End of file - total 102 lines)
+
+```
+## Agent (2026-02-21 21:48:00)
+
+The issue might be that Quartz by default binds to `localhost` (127.0.0.1). Let me check if there's a `--host` option we need to pass. Let me look at the Quartz CLI to see what options are available:
+
+### Tool Call [completed]: nix build .#quartz-patched && cat result/quartz/bootstrap-cli.mjs | grep -A5 -B5 "host\|bind\|0.0.0.0\|127.0.0.1" | head -50
+
+**Tool:** execute
+**Timestamp:** 2026-02-21 21:48:03
+
+```
+warning: Git tree '/home/ignaciobll/code/org-garden' is dirty
+```
+
+
+### Tool Call [completed]:
+
+**Timestamp:** 2026-02-21 21:48:13
+
+```
+
+```
+
+
+### Tool Call [completed]:
+
+**Timestamp:** 2026-02-21 21:48:18
+
+```
+#!/usr/bin/env -S node --no-deprecation
+import yargs from "yargs"
+import { hideBin } from "yargs/helpers"
+import {
+ handleBuild,
+ handleCreate,
+ handleUpdate,
+ handleRestore,
+ handleSync,
+} from "./cli/handlers.js"
+import { CommonArgv, BuildArgv, CreateArgv, SyncArgv } from "./cli/args.js"
+import { version } from "./cli/constants.js"
+
+yargs(hideBin(process.argv))
+ .scriptName("quartz")
+ .version(version)
+ .usage("$0 [args]")
+ .command("create", "Initialize Quartz", CreateArgv, async (argv) => {
+ await handleCreate(argv)
+ })
+ .command("update", "Get the latest Quartz updates", CommonArgv, async (argv) => {
+ await handleUpdate(argv)
+ })
+ .command(
+ "restore",
+ "Try to restore your content folder from the cache",
+ CommonArgv,
+ async (argv) => {
+ await handleRestore(argv)
+ },
+ )
+ .command("sync", "Sync your Quartz to and from GitHub.", SyncArgv, async (argv) => {
+ await handleSync(argv)
+ })
+ .command("build", "Build Quartz into a bundle of static HTML files", BuildArgv, async (argv) => {
+ await handleBuild(argv)
+ })
+ .showHelpOnFail(false)
+ .help()
+ .strict()
+ .demandCommand().argv
+```
+
+
+### Tool Call [completed]:
+
+**Timestamp:** 2026-02-21 21:48:22
+
+```
+export const CommonArgv = {
+ directory: {
+ string: true,
+ alias: ["d"],
+ default: "content",
+ describe: "directory to look for content files",
+ },
+ verbose: {
+ boolean: true,
+ alias: ["v"],
+ default: false,
+ describe: "print out extra logging information",
+ },
+}
+
+export const CreateArgv = {
+ ...CommonArgv,
+ source: {
+ string: true,
+ alias: ["s"],
+ describe: "source directory to copy/create symlink from",
+ },
+ strategy: {
+ string: true,
+ alias: ["X"],
+ choices: ["new", "copy", "symlink"],
+ describe: "strategy for content folder setup",
+ },
+ links: {
+ string: true,
+ alias: ["l"],
+ choices: ["absolute", "shortest", "relative"],
+ describe: "strategy to resolve links",
+ },
+}
+
+export const SyncArgv = {
+ ...CommonArgv,
+ commit: {
+ boolean: true,
+ default: true,
+ describe: "create a git commit for your unsaved changes",
+ },
+ message: {
+ string: true,
+ alias: ["m"],
+ describe: "option to override the default Quartz commit message",
+ },
+ push: {
+ boolean: true,
+ default: true,
+ describe: "push updates to your Quartz fork",
+ },
+ pull: {
+ boolean: true,
+ default: true,
+ describe: "pull updates from your Quartz fork",
+ },
+}
+
+export const BuildArgv = {
+ ...CommonArgv,
+ output: {
+ string: true,
+ alias: ["o"],
+ default: "public",
+ describe: "output folder for files",
+ },
+ serve: {
+ boolean: true,
+ default: false,
+ describe: "run a local server to live-preview your Quartz",
+ },
+ watch: {
+ boolean: true,
+ default: false,
+ describe: "watch for changes and rebuild automatically",
+ },
+ baseDir: {
+ string: true,
+```
+
+
+### Tool Call [completed]:
+
+**Timestamp:** 2026-02-21 21:48:27
+
+```
+export const CommonArgv = {
+ directory: {
+ string: true,
+ alias: ["d"],
+ default: "content",
+ describe: "directory to look for content files",
+ },
+ verbose: {
+ boolean: true,
+ alias: ["v"],
+ default: false,
+ describe: "print out extra logging information",
+ },
+}
+
+export const CreateArgv = {
+ ...CommonArgv,
+ source: {
+ string: true,
+ alias: ["s"],
+ describe: "source directory to copy/create symlink from",
+ },
+ strategy: {
+ string: true,
+ alias: ["X"],
+ choices: ["new", "copy", "symlink"],
+ describe: "strategy for content folder setup",
+ },
+ links: {
+ string: true,
+ alias: ["l"],
+ choices: ["absolute", "shortest", "relative"],
+ describe: "strategy to resolve links",
+ },
+}
+
+export const SyncArgv = {
+ ...CommonArgv,
+ commit: {
+ boolean: true,
+ default: true,
+ describe: "create a git commit for your unsaved changes",
+ },
+ message: {
+ string: true,
+ alias: ["m"],
+ describe: "option to override the default Quartz commit message",
+ },
+ push: {
+ boolean: true,
+ default: true,
+ describe: "push updates to your Quartz fork",
+ },
+ pull: {
+ boolean: true,
+ default: true,
+ describe: "pull updates from your Quartz fork",
+ },
+}
+
+export const BuildArgv = {
+ ...CommonArgv,
+ output: {
+ string: true,
+ alias: ["o"],
+ default: "public",
+ describe: "output folder for files",
+ },
+ serve: {
+ boolean: true,
+ default: false,
+ describe: "run a local server to live-preview your Quartz",
+ },
+ watch: {
+ boolean: true,
+ default: false,
+ describe: "watch for changes and rebuild automatically",
+ },
+ baseDir: {
+ string: true,
+ default: "",
+ describe: "base path to serve your local server on",
+ },
+ port: {
+ number: true,
+ default: 8080,
+ describe: "port to serve Quartz on",
+ },
+ wsPort: {
+ number: true,
+ default: 3001,
+ describe: "port to use for WebSocket-based hot-reload notifications",
+ },
+ remoteDevHost: {
+ string: true,
+ default: "",
+ describe: "A URL override for the websocket connection if you are not developing on localhost",
+ },
+ bundleInfo: {
+ boolean: true,
+ default: false,
+ describe: "show detailed bundle information",
+ },
+ concurrency: {
+ number: true,
+ describe: "how many threads to use to parse notes",
+ },
+}
+```
+## Agent (2026-02-21 21:48:31)
+
+I see! There's no `--host` option directly. Let me check the handlers.js to see how the server is started:
+
+### Tool Call [failed]:
+
+**Timestamp:** 2026-02-21 21:48:35
+
+```
+Error: The user rejected permission to use this specific tool call.
+```
+## User (2026-02-21 21:49:11)
+
+This is the log: 21:48:59.946 module=OrgGarden.Quartz [info] [quartz] Started a Quartz server listening at http://localhost:0
+
+## Agent (2026-02-21 21:49:16)
+
+The issue is clear: Quartz is reporting `localhost:0` which means the port isn't being passed correctly. Looking at the args, Quartz expects `--port` as a number, but we're passing it as a string. Let me check the actual command being built:
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:49:19
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/quartz.ex
+file
+70: args = [
+71: cli_path,
+72: "build",
+73: "--serve",
+74: "--directory",
+75: content_dir,
+76: "--port",
+77: to_string(http_port),
+78: "--wsPort",
+79: to_string(ws_port)
+80: ]
+81:
+82: Logger.info("[quartz] Starting: #{node_path} #{Enum.join(args, " ")}")
+83: Logger.info("[quartz] Working directory: #{quartz_path}")
+84:
+85: port =
+86: Port.open({:spawn_executable, node_path}, [
+87: :binary,
+88: :exit_status,
+89: :stderr_to_stdout,
+
+(File has more lines. Use 'offset' parameter to read beyond line 89)
+
+```
+## Agent (2026-02-21 21:49:21)
+
+The command looks correct. The issue might be that the port value itself is wrong. Let me check how the port is being retrieved in the init - it could be that `Config.get(:http_port, 8080)` is returning something unexpected, or that the opts aren't being passed correctly from the Supervisor.
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:49:23
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/supervisor.ex
+file
+1: defmodule OrgGarden.Supervisor do
+2: @moduledoc """
+3: Supervises development server components.
+4:
+5: Strategy: :one_for_all
+6: If either child fails, restart both to ensure consistent state.
+7:
+8: Children:
+9: 1. OrgGarden.Watcher - watches .org files for changes
+10: 2. OrgGarden.Quartz - runs Quartz Node.js server
+11:
+12: ## Usage
+13:
+14: OrgGarden.Supervisor.start_link(
+15: notes_dir: "/path/to/notes",
+16: output_dir: "/path/to/output",
+17: content_dir: "/path/to/output/content",
+18: pipeline_opts: %{zotero_url: "...", ...},
+19: transforms: [OrgGarden.Transforms.Citations],
+20: port: 8080,
+21: ws_port: 3001
+22: )
+23: """
+24: use Supervisor
+25:
+26: def start_link(opts) do
+27: Supervisor.start_link(__MODULE__, opts, name: __MODULE__)
+28: end
+29:
+30: @impl true
+31: def init(opts) do
+32: children = [
+33: {OrgGarden.Watcher,
+34: Keyword.take(opts, [:notes_dir, :output_dir, :content_dir, :pipeline_opts, :transforms])},
+35: {OrgGarden.Quartz, Keyword.take(opts, [:content_dir, :port, :ws_port])}
+36: ]
+37:
+38: Supervisor.init(children, strategy: :one_for_all)
+39: end
+40: end
+41:
+
+(End of file - total 41 lines)
+
+```
+## Agent (2026-02-21 21:49:25)
+
+The supervisor is taking `:port` and `:ws_port` correctly. Let me trace back further to see if the Server is passing them:
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:49:26
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/server.ex
+file
+120: @impl true
+121: def terminate(reason, state) do
+122: Logger.info("Server shutting down: #{inspect(reason)}")
+123:
+124: if state.supervisor_pid do
+125: # Stop the supervisor gracefully
+126: DynamicSupervisor.terminate_child(OrgGarden.DynamicSupervisor, state.supervisor_pid)
+127: end
+128:
+129: :ok
+130: end
+131:
+132: # -------------------------------------------------------------------
+133: # Private functions
+134: # -------------------------------------------------------------------
+135:
+136: defp run_initial_pipeline(state) do
+137: %{
+138: notes_dir: notes_dir,
+139: output_dir: output_dir,
+140: content_dir: content_dir,
+141: pipeline_opts: pipeline_opts
+142: } = state
+143:
+144: Logger.info("Running initial export pipeline...")
+145:
+146: # Wipe content directory
+147: wipe(content_dir)
+148:
+149: # Export all org files
+150: case OrgGarden.Export.export_all(notes_dir, output_dir) do
+151: {:ok, 0} ->
+152: Logger.warning("No .org files found in #{notes_dir}")
+153: :ok
+154:
+155: {:ok, count} ->
+156: Logger.info("Exported #{count} file(s)")
+157:
+158: # Run transforms
+159: {:ok, stats} = OrgGarden.run(content_dir, @transforms, pipeline_opts)
+
+(File has more lines. Use 'offset' parameter to read beyond line 159)
+
+```
+
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:49:29
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/server.ex
+file
+165: # Generate index
+166: OrgGarden.Index.generate(content_dir)
+167: :ok
+168:
+169: {:error, failures} ->
+170: Logger.error("Failed to export #{length(failures)} file(s)")
+171: {:error, {:export_failed, failures}}
+172: end
+173: end
+174:
+175: defp start_supervisor(state) do
+176: %{
+177: notes_dir: notes_dir,
+178: output_dir: output_dir,
+179: content_dir: content_dir,
+180: pipeline_opts: pipeline_opts,
+181: http_port: http_port,
+182: ws_port: ws_port
+183: } = state
+184:
+185: child_spec = {
+186: OrgGarden.Supervisor,
+187: [
+188: notes_dir: notes_dir,
+189: output_dir: output_dir,
+190: content_dir: content_dir,
+191: pipeline_opts: pipeline_opts,
+192: transforms: @transforms,
+193: port: http_port,
+194: ws_port: ws_port
+195: ]
+196: }
+197:
+198: DynamicSupervisor.start_child(OrgGarden.DynamicSupervisor, child_spec)
+199: end
+200:
+201: defp wipe(content_dir) do
+202: Logger.info("Wiping #{content_dir}")
+203: File.mkdir_p!(content_dir)
+204:
+
+(File has more lines. Use 'offset' parameter to read beyond line 204)
+
+```
+## Agent (2026-02-21 21:49:32)
+
+The Server is passing `port: http_port` correctly. Let me look at the init where http_port is set:
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:49:34
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/server.ex
+file
+60: Process.whereis(__MODULE__) != nil
+61: end
+62:
+63: # -------------------------------------------------------------------
+64: # GenServer callbacks
+65: # -------------------------------------------------------------------
+66:
+67: @impl true
+68: def init(opts) do
+69: Process.flag(:trap_exit, true)
+70:
+71: notes_dir = Keyword.fetch!(opts, :notes_dir)
+72: output_dir = Keyword.fetch!(opts, :output_dir)
+73: content_dir = Keyword.get(opts, :content_dir, Path.join(output_dir, "content"))
+74: http_port = Keyword.get(opts, :port, Config.get(:http_port, 8080))
+75: ws_port = Keyword.get(opts, :ws_port, Config.get(:ws_port, 3001))
+76:
+77: pipeline_opts = Config.pipeline_opts()
+78:
+79: state = %{
+80: notes_dir: notes_dir,
+81: output_dir: output_dir,
+82: content_dir: content_dir,
+83: pipeline_opts: pipeline_opts,
+84: http_port: http_port,
+85: ws_port: ws_port,
+86: supervisor_pid: nil
+87: }
+88:
+89: # Run initial pipeline synchronously
+
+(File has more lines. Use 'offset' parameter to read beyond line 89)
+
+```
+## Agent (2026-02-21 21:49:36)
+
+I see it now! In Server.ex line 74, it uses `:port` to get from opts (`Keyword.get(opts, :port, ...)`), but the CLI passes it as `:port`. That's fine. But wait - let me check where in CLI the ports are passed to Server:
+
+### Tool Call [completed]: grep
+
+**Tool:** search
+**Timestamp:** 2026-02-21 21:49:39
+
+```
+Found 5 matches
+/home/ignaciobll/code/org-garden/lib/org_garden/watcher.ex:
+ Line 50: GenServer.start_link(__MODULE__, opts, name: __MODULE__)
+
+/home/ignaciobll/code/org-garden/lib/org_garden/quartz.ex:
+ Line 39: GenServer.start_link(__MODULE__, opts, name: __MODULE__)
+
+/home/ignaciobll/code/org-garden/lib/org_garden/cli.ex:
+ Line 78: case OrgGarden.Server.start_link(
+
+/home/ignaciobll/code/org-garden/lib/org_garden/server.ex:
+ Line 13: {:ok, pid} = OrgGarden.Server.start_link(
+ Line 46: GenServer.start_link(__MODULE__, opts, name: __MODULE__)
+```
+
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:49:42
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/cli.ex
+file
+75:
+76: IO.puts("==> Starting development server...")
+77:
+78: case OrgGarden.Server.start_link(
+79: notes_dir: notes_dir,
+80: output_dir: output_dir,
+81: content_dir: content_dir,
+82: port: opts[:port],
+83: ws_port: opts[:ws_port]
+84: ) do
+85: {:ok, pid} ->
+86: IO.puts("==> Server running at http://localhost:#{opts[:port] || Config.get(:http_port, 8080)}")
+87: IO.puts("==> Watching #{notes_dir} for changes (Ctrl+C to stop)")
+88:
+89: # Wait for server to exit
+90: ref = Process.monitor(pid)
+91:
+92: receive do
+93: {:DOWN, ^ref, :process, ^pid, reason} ->
+94: case reason do
+
+(File has more lines. Use 'offset' parameter to read beyond line 94)
+
+```
+## Agent (2026-02-21 21:49:46)
+
+The problem is on line 82-83: `port: opts[:port]` and `ws_port: opts[:ws_port]`. When these options are not provided via CLI, `opts[:port]` returns `nil`, not the default value. Then in Server.ex:
+
+```elixir
+http_port = Keyword.get(opts, :port, Config.get(:http_port, 8080))
+```
+
+If `:port` key exists but has value `nil`, `Keyword.get` returns `nil`, not the default! The issue is that the CLI passes `nil` values explicitly.
+
+Let me fix this:
+
+### Tool Call [completed]: edit
+
+**Tool:** edit
+**Timestamp:** 2026-02-21 21:49:51
+
+```
+Edit applied successfully.
+
+
+
+
+
+╭─────────╮
+│ changes │
+╰─────────╯
+
+@@ -1,7 +1,10 @@
+- case OrgGarden.Server.start_link(
+- notes_dir: notes_dir,
+- output_dir: output_dir,
+- content_dir: content_dir,
+- port: opts[:port],
+- ws_port: opts[:ws_port]
+- ) do
+\ No newline at end of file
++ server_opts =
++ [
++ notes_dir: notes_dir,
++ output_dir: output_dir,
++ content_dir: content_dir
++ ]
++ |> maybe_put(:port, opts[:port])
++ |> maybe_put(:ws_port, opts[:ws_port])
++
++ case OrgGarden.Server.start_link(server_opts) do
+\ No newline at end of file
+```
+## Agent (2026-02-21 21:49:53)
+
+Now let me add the `maybe_put` helper function at the end of the CLI module:
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:49:55
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/cli.ex
+file
+280: (opts[:content_dir] || Path.join(output_dir, "content"))
+281: |> Path.expand()
+282: end
+283:
+284: # ---------------------------------------------------------------------------
+285: # Phase 1: Wipe content/
+286: # ---------------------------------------------------------------------------
+287:
+288: defp wipe(content_dir) do
+289: IO.puts("==> Wiping #{content_dir}")
+290: File.mkdir_p!(content_dir)
+291:
+292: content_dir
+293: |> File.ls!()
+294: |> Enum.reject(&(&1 == ".gitkeep"))
+295: |> Enum.each(fn entry ->
+296: Path.join(content_dir, entry) |> File.rm_rf!()
+297: end)
+298: end
+299:
+300: # ---------------------------------------------------------------------------
+301: # Phase 2: Export org files via Emacs + ox-hugo
+302: # ---------------------------------------------------------------------------
+303:
+304: defp export_all(notes_dir, output_dir) do
+305: IO.puts("==> Exporting org files from #{notes_dir}")
+306:
+307: case OrgGarden.Export.export_all(notes_dir, output_dir) do
+308: {:ok, 0} ->
+309: IO.puts("No .org files found in #{notes_dir}")
+
+(File has more lines. Use 'offset' parameter to read beyond line 309)
+
+```
+
+
+### Tool Call [completed]: read
+
+**Tool:** read
+**Timestamp:** 2026-02-21 21:49:57
+
+```
+/home/ignaciobll/code/org-garden/lib/org_garden/cli.ex
+file
+370: """)
+371:
+372: path ->
+373: unless File.exists?(Path.join(path, "quartz/bootstrap-cli.mjs")) do
+374: abort("Error: QUARTZ_PATH=#{path} does not contain quartz/bootstrap-cli.mjs")
+375: end
+376:
+377: path
+378: end
+379: end
+380:
+381: defp abort(message) do
+382: IO.puts(:stderr, message)
+383: System.halt(1)
+384: end
+385: end
+386:
+
+(End of file - total 386 lines)
+
+```
+
+
+### Tool Call [completed]: edit
+
+**Tool:** edit
+**Timestamp:** 2026-02-21 21:50:00
+
+```
+Edit applied successfully.
+
+
+
+
+
+╭─────────╮
+│ changes │
+╰─────────╯
+
+@@ -2,4 +2,7 @@
+ IO.puts(:stderr, message)
+ System.halt(1)
+ end
++
++ defp maybe_put(keyword, _key, nil), do: keyword
++ defp maybe_put(keyword, key, value), do: Keyword.put(keyword, key, value)
+ end
+\ No newline at end of file
+```
+## Agent (2026-02-21 21:50:02)
+
+Now let's verify it compiles:
+
+### Tool Call [completed]: nix develop --command mix compile --warnings-as-errors
+
+**Tool:** execute
+**Timestamp:** 2026-02-21 21:50:06
+
+```
+warning: Git tree '/home/ignaciobll/code/org-garden' is dirty
+Compiling 1 file (.ex)
+Generated org_garden app
+```
+## Agent (2026-02-21 21:50:09)
+
Now let's commit and push:
\ No newline at end of file
diff --git a/lib/org_garden/cli.ex b/lib/org_garden/cli.ex
index 44abdb3..977d1ca 100644
--- a/lib/org_garden/cli.ex
+++ b/lib/org_garden/cli.ex
@@ -75,13 +75,16 @@ defmodule OrgGarden.CLI do
IO.puts("==> Starting development server...")
- case OrgGarden.Server.start_link(
- notes_dir: notes_dir,
- output_dir: output_dir,
- content_dir: content_dir,
- port: opts[:port],
- ws_port: opts[:ws_port]
- ) do
+ server_opts =
+ [
+ notes_dir: notes_dir,
+ output_dir: output_dir,
+ content_dir: content_dir
+ ]
+ |> maybe_put(:port, opts[:port])
+ |> maybe_put(:ws_port, opts[:ws_port])
+
+ case OrgGarden.Server.start_link(server_opts) do
{:ok, pid} ->
IO.puts("==> Server running at http://localhost:#{opts[:port] || Config.get(:http_port, 8080)}")
IO.puts("==> Watching #{notes_dir} for changes (Ctrl+C to stop)")
@@ -379,4 +382,7 @@ defmodule OrgGarden.CLI do
IO.puts(:stderr, message)
System.halt(1)
end
+
+ defp maybe_put(keyword, _key, nil), do: keyword
+ defp maybe_put(keyword, key, value), do: Keyword.put(keyword, key, value)
end